- Munby H, Linderoth T, Fisher B, Du M, Vernaz G, Tyers AM, Ngatunga BP, Shechonge A, Denise H, McCarthy SA, Bista I, Miska EA, Santos ME, Genner MJ, Turner GF, Durbin R (2021) Differential use of multiple genetic sex determination systems in divergent ecomorphs of an african crater lake cichlid. bioRxiv
- Vernaz G, Hudson AG, Santos ME, Fisher B, Carruthers M, Shechonge AH, Gabagambi NP, Tyers AM, Ngatunga BP, Malinsky M, Durbin R, Turner GF, Genner MJ, Miska EA (2021) Epigenetic divergence during early stages of speciation in african crater lake cichlid fish. Nature Ecology and Evolution, 1-12.
- Vernaz G, Malinsky M, Svardal H, Du M, Tyers AM, Santos ME, Durbin R, Genner MJ, Turner GF, Miska EA (2021) Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes. Nature Communications, 12:5870
- Svardal H, Rusuwa B, Linderoth T, Kiran A, Charmantier A, Lattorff HMG, Cagan A, Ommeh SC, Kamng’ona A, Katong C, Santos ME, Durbin R, Kumwenda B, Visscher PM, von der Heyden S, and the Participants of SMBE Malawi (2020) Evolutionary Genomics at the Human-Environment Interface in Africa. Molecular Biology and Evolution, 10: 3076-3080
- Vargas-Lowman A, Armisen D, Floriano CFB, Silva Cordeiro IR, Viala S, Bouchet M, Bernard M, Le Bouquin A, Santos ME, Berlioz-Barbier A, SalvadorA, Moreira FFF, Bonneton F, Khila A (2019) Cooption of the pteridine biosynthesis pathway underlies the diversification of embryonic colors in water striders. PNAS, 116:19046-19054.
- Souza da Motta F, Moreira FFF, Crumière AJJ, Santos ME, Khila A (2018) A new species of Rhagovelia Mayr, 1865 (Hemiptera: Heteroptera: Veliidae) from French Guiana, with new records of Gerromorpha from the the country. Zootaxa, 4433:520-530
- Santos ME (2017) One gene, multiple alleles: insights into the microevolution of pigmentation patterns. Molecular Ecology 26:2605-2607
- Crumière AJJ, Santos ME, Sémon M, Armisén D, Moreira FFF, and Khila A (2016) Diversity in morphology and locomotory behavior is associated with niche expansion in the semi-aquatic bugs. Current Biology, 26:3336-3342
- Colombo M, Diepeveen ET, Muschick M, Santos ME, Indermaur A, Boileau N, Barluenga M, Salzburger W (2013) The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes. Molecular Ecology, 22:670-684.
- Baldo L, Santos ME, Salzburger W (2011) Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity. Genome Biology and Evolution, 3:443-55.
- Lopes PC, Sucena E, Santos ME, Magalhães S (2008) Rapid experimental evolution of pesticide resistance in C. elegans entails no costs and affects the mating system. PLoS ONE, 3(11): e3741.
Genome consortium publications
- Panfilio KA, Vargas Jentzsch IM, Benoit JB [ and 78 other, including Santos ME] (2019) Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology, 20: 64.
- Armisen D, Rjakuma R, Friedrich M [ and 51 other, including Santos ME] (2018) The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to live on the water. BMC Genomics, 19: 832.
- Adelman Z, Reinhardt K, Dolan A, [ and 77 other, including Santos ME] (2016) Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications, 7:10165.
- Brawand D, Wagner CE, Li YI, [ and 72 other, including Santos ME] (2014) The genomic substract for adaptive radiation in African cichlid fish. Nature, 513:375-381.