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Peer-reviewed publications

Preprints

*: these authors contributed equally

 

Peer-reviewed publications

2020

Alexander S. Bates*, Philipp Schlegel*, Ruairi J.V. Roberts, Nikolas Drummond, Imaan F.M. Tamimi, Robert Turnbull, Xincheng Zhao, Elizabeth C. Marin, Patricia D. Popovici, Serene Dhawan, Arian Jamasb, Alexandre Javier, Laia Serratosa Capdevila, Feng Li, Gerald M. Rubin, Scott Waddell, Davi D. Bock, Marta Costa and Gregory S.X.E. Jefferis (2020) Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain, Current Biology

Elizabeth C. Marin, Laurin Büld, Maria Theiss, Tatevik Sarkissian, Ruairí J.V. Roberts, Robert Turnbull, Imaan F.M. Tamimi, Markus W. Pleijzier, Willem J. Laursen, Nik Drummond, Philipp Schlegel, Alexander S. Bates, Feng Li, Matthias Landgraf, Marta Costa, Davi D. Bock, Paul A. Garrity and Gregory S.X.E. Jefferis (2020) Connectomics Analysis Reveals First-, Second-, and Third-Order Thermosensory and Hygrosensory Neurons in the Adult Drosophila Brain, Current Biology

Nils Otto, Markus W. Pleijzier, Isabel C. Morgan, Amelia J. Edmondson-Stait, Konrad J. Heinz, Ildiko Stark, Georgia Dempsey, Masayoshi Ito, Ishaan Kapoor, Joseph Hsu, Philipp M. Schlegel, Alexander S. Bates, Li Feng, Marta Costa, Kei Ito, Davi D. Bock, Gerald M. Rubin, Gregory S.X.E. Jefferis and Scott Waddell (2020) Input Connectivity Reveals Additional Heterogeneity of Dopaminergic Reinforcement in Drosophila, Current Biology

Alexander S. Bates, James D. Manton, Sridhar R. Jagannathan, Marta Costa, Philipp Schlegel, Torsten Rohlfing, Gregory S. X. E. Jefferis (2020) The natverse, a versatile computational toolbox to combine and analyse neuroanatomical dataeLife

 

2019

S. Sayin, J.-F. De Backer, K.P. Siju, M.E. Wosniack, L.P. Lewis, L.-M. Frisch, B. Gansen, P. Schlegel, A. Edmondson-Stait, N. Sharifi, C.B. Fisher, S.A. Calle-Schuler, J.S. Lauritzen, D.D. Bock, M. Costa, G.S.X.E. Jefferis, J. Gjorgjieva, I.C. Grunwald Kadow (2019). A Neural Circuit Arbitrates between Persistence and Withdrawal in Hungry Drosophila. Neuron

Shahar Frechter, Alexander Shakeel Bates, Sina Tootoonian, Michael-John Dolan, James D Manton, Arian Rokkum Jamasb, Johannes Kohl, Davi D. BockGregory SXE Jefferis (2019). Functional and anatomical specificity in a higher olfactory centreeLife

Michael-John Dolan, Shahar Frechter, Alexander Shakeel Bates, Chuntao Dan, Paavo Huoviala, Ruairi JV Roberts, Philipp Schlegel, Serene Dhawan, Remy Tabano, Heather Dionne, Christina Christoforou, Kari Close, Ben Sutcliffe, Bianca Giuliani, Feng LiMarta Costa, Gudrun Ihrke, Geoffrey Meissner, Davi D. Bock, Yoshinori Aso, Gerald M. Rubin*Gregory SXE Jefferis* (2019). Neurogenetic dissection of the Drosophila lateral horn reveals output, functions and interaction with the mushroom bodyeLife

Alexander Shakeel Bates, Jasper Janssens, Gregory SXE Jefferis and Stein Aerts (2019). Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics​Current Opinion in Neurobiology​

 

2018

Michael-John Dolan*, Ghislain Belliart-Guérin*, Alexander Shakeel Bates, Shahar Frechter, Aurélie Lampin-Saint-Amaux, Yoshinori Aso, Ruairí JV Roberts, Philipp Schlegel, Allan Wong, Adnan Hammad, Davi D. Bock, Gerald M. Rubin, Thomas Preat, Pierre-Yves Plaçais and Gregory SXE Jefferis (2018) Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila. Neuron

Johannes Felsenberg, Pedro F. Jacob, Thomas Walker, Oliver Barnstedt, Amelia J. Edmondson-Stait, Markus W. Pleijzier, Nils Otto, Philipp Schlegel, Nadiya Sharifi, Emmanuel Perisse, Carlas S. Smith, J. Scott Lauritzen, Marta Costa, Gregory SXE Jefferis, Davi D. Bock and Scott Waddell (2018) Integration of Parallel Opposing Memories Underlies Memory Extinction. Cell

Zhihao Zheng*, J. Scott Lauritzen*, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel Milkie, Omar Torrens, John Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory SXE Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter and Davi D. Bock (2018). A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster. Cell 

 

2017

Philipp Schlegel*, Marta Costa*, Gregory SXE Jefferis (2017) Learning from Connectomics on the flyCurrent Opinion in Insect Science, 24:96–105

Elizabeth Marin & Marta Costa (2017) Sensory Neurobiology: Wet Fly FishingCurrent Biology, 27:R833–R852

 

Preprints

Nils Eckstein, Alexander S. Bates, Michelle Du, Volker Hartenstein, Gregory S. X. E. Jefferis, Jan Funke (2020) Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in DrosophilabioRxiv 

Nils Otto, Markus W. Pleijzier, Isabel C. Morgan, Amelia J. Edmondson-Stait, Konrad J. Heinz, Ildiko Stark, Georgia Dempsey, Masayoshi Ito, Ishaan Kapoor, Joseph Hsu, Philipp M. Schlegel, Alexander S. Bates, Marta Costa, Kei Ito, Davi D. Bock, Gerald M Rubin, Gregory S. X. E. Jefferis, Scott Waddell (2020) Input connectivity reveals additional heterogeneity of dopaminergic reinforcement in DrosophilabioRxiv 

C. Shan Xu, Michal Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, David Ackerman, Stuart Berg, Tim Blakely, John Bogovic, Jody Clements, Tom Dolafi, Philip Hubbard, Dagmar Kainmueller, William Katz, Takashi Kawase, Khaled A. Khairy, Laramie Leavitt, Peter H. Li, Larry Lindsey, Nicole Neubarth, Donald J. Olbris, Hideo Otsuna, Eric T. Troutman, Lowell Umayam, Ting Zhao, Masayoshi Ito, Jens Goldammer, Tanya Wolff, Robert Svirskas, Philipp Schlegel, Erika R. Neace, Christopher J. Knecht Jr., Chelsea X. Alvarado, Dennis A. Bailey, Samantha Ballinger, Jolanta A Borycz, Brandon S. Canino, Natasha Cheatham, Michael Cook, Marisa Dreher, Octave Duclos, Bryon Eubanks, Kelli Fairbanks, Samantha Finley, Nora Forknall, Audrey Francis, Gary Patrick Hopkins, Emily M. Joyce, SungJin Kim, Nicole A. Kirk, Julie Kovalyak, Shirley A. Lauchie, Alanna Lohff, Charli Maldonado, Emily A. Manley, Sari McLin, Caroline Mooney, Miatta Ndama, Omotara Ogundeyi, Nneoma Okeoma, Christopher Ordish, Nicholas Padilla, Christopher Patrick, Tyler Paterson, Elliott E. Phillips, Emily M. Phillips, Neha Rampally, Caitlin Ribeiro, Madelaine K Robertson, Jon Thomson Rymer, Sean M. Ryan, Megan Sammons, Anne K. Scott, Ashley L. Scott, Aya Shinomiya, Claire Smith, Kelsey Smith, Natalie L. Smith, Margaret A. Sobeski, Alia Suleiman, Jackie Swift, Satoko Takemura, Iris Talebi, Dorota Tarnogorska, Emily Tenshaw, Temour Tokhi, John J. Walsh, Tansy Yang, Jane Anne Horne, Feng Li, Ruchi Parekh, Patricia K. Rivlin, Vivek Jayaraman, Kei Ito, Stephan Saalfeld, Reed George, Ian Meinertzhagen, Gerald M. Rubin, Harald F. Hess, Louis K. Scheffer, Viren Jain, Stephen M. Plaza (2020) A Connectome of the Adult Drosophila Central Brain, bioRxiv

Elizabeth C. Marin, Ruairi J.V. Roberts, Laurin Büld, Maria Theiss, Markus W Pleijzier, Tatevik Sarkissian, Willem J. Laursen, Robert Gillies Turnbull, Philipp Schlegel, Alexander Shakeel Bates, Feng Li, Matthias Landgraf, Marta Costa, Davi D. Bock, Paul A. Garrity, Gregory S. X. E. Jefferis (2020) Connectomics analysis reveals first, second, and third order thermosensory and hygrosensory neurons in the adult Drosophila brain, bioRxiv Twitter thread with highlights

Alexander Shakeel Bates, Philipp Schlegel, Ruairí J. V. Roberts, Nikolas Drummond, Imaan F. M. Tamimi, Robert Gillies Turnbull, Xincheng Zhao, Elizabeth C. Marin, Patricia Demetria Popovici, Serene Dhawan, Arian Rokkum Jamasb, Alexandre Javier, Feng Li, Gerald M. Rubin, Scott Waddell, Davi D. Bock, Marta Costa and Gregory S. X. E. Jefferis (2020) Complete connectomic reconstruction of olfactory projection neurons in the fly brain, bioRxiv Twitter thread with highlights 

Julia Buhmann, Arlo Sheridan, Stephan Gerhard, Renate Krause, Tri Nguyen, Larissa Heinrich, Philipp Schlegel, Wei-Chung Allen Lee, Rachel Wilson, Stephan Saalfeld, Gregory Jefferis, Davi Bock, Srinivas Turaga, Matthew Cook, Jan Funke (2019) Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM DatasetbioRxiv

Alexander S. Bates, James D. Manton, Sridhar R. Jagannathan, Marta Costa, Philipp Schlegel, Torsten Rohlfing, Gregory S. X. E. Jefferis (2019) The natverse: a versatile computational toolbox to combine and analyse neuroanatomical data, bioRxiv

Peter H. Li, Larry F. Lindsey, Michal Januszewski, Zhihao Zheng, Alexander Shakeel Bates, István Taisz, Mike Tyka, Matthew Nichols, Feng Li, Eric Perlman, Jeremy Maitin-Shepard, Tim Blakely, Laramie Leavitt, Gregory SXE Jefferis, Davi D. Bock and Viren Jain (2019) Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local RealignmentbioRxiv

Michael-John Dolan, Shahar Frechter, Alexander Shakeel Bates, Chuntao Dan, Paavo Huoviala, Ruairí JV Roberts, Philipp Schlegel, Serene Dhawan, Remy Tabano, Heather Dionne, Christina Christoforou, Kari Close, Ben Sutcliffe, Bianca Giuliani, Feng Li, Marta Costa, Gudrun Ihrke, Geoffrey Meissner, Davi D. Bock, Yoshinori Aso, Gerald M. RubinGregory SXE Jefferis (2018) Neurogenetic dissection of the Drosophila innate olfactory processing center, bioRxiv

Paavo Huoviala, Michael-John Dolan*, Fiona M. Love*, Shahar Frechter, Ruairí J.V. Roberts, Zane Mitrevica, Philipp Schlegel, Alexander Shakeel Bates, Yoshinori Aso, Tiago Rodrigues, Hannah Cornwall, Marcus Stensmyr, Davi D. Bock, Gerald M. Rubin, Marta Costa, Gregory SXE Jefferis (2018) Neural circuit basis of aversive odour processing in Drosophila from sensory input to descending outputbioRxiv

Shahar Frechter, Alexander Shakeel Bates, Sina Tootoonian, Michael-John Dolan, James D.Manton, Arian Jamasb, Johannes Kohl, Davi D. Bock, Gregory SXE Jefferis (2018) Functional and Anatomical Specificity in a Higher Olfactory CentrebioRxiv

S Sayin, J-F De Backer, ME Wosniack, L Lewis, KP Siju, L-M Frisch, Philipp Schlegel, Amelia Edmondson-Stait, Nadiya Sharifi​, Corey B. Fisher, Steven A. Calle-Schuler, J. Scott Lauritzen, Davi D. Bock, Marta Costa, Gregory SXE Jefferis, J Gjorgjieva, I Grunwald Kadow (2018) A neural circuit arbitrates between perseverance and withdrawal in hungry Drosophila, bioRxiv

Michael-John Dolan*, Ghislain Belliart-Guérin*, Alexander Shakeel Bates, Yoshinori Aso, Shahar Frechter, Ruairí  JV Roberts, Philipp Schlegel, A Wong, A Hammad, Davi D. Bock, Gerald M. Rubin, Thomas Preat, Pierre-Yves Plaçais, GSXE Jefferis (2017) Communication from learned to innate olfactory processing centres is required for memory retrieval in DrosophilabioRxiv

Zhihao Zheng*, J. Scott Lauritzen*, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel Milkie, Omar Torrens, John Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory SXE Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter and Davi D. Bock (2017) A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogasterbioRxiv